PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G025200.1
Common NameB456_010G025200, LOC105774481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 248aa    MW: 26210 Da    PI: 7.8397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G025200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002684106123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  Gorai.010G025200.1  84 YKCSVCNKAFNSYQALGGHKASH 106
                         9***********99999998887 PP

2zf-C2H214.50.0001136158123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+ksF++   L  H r+H
  Gorai.010G025200.1 136 HECSICHKSFPTGQALGGHKRRH 158
                         78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-480106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.20184106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-1084158No hitNo description
SMARTSM003550.007184106IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-1384108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473136158IPR007087Zinc finger, C2H2
SMARTSM003550.039136158IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-13136160IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MALEAINSPT SATAPFRFDD TNLHCLESFT KRKRSKRPRL DHVTAEEEYL ALCLIMLARG  60
GGQRSPSPTT MPEPTSTEEQ KPSYKCSVCN KAFNSYQALG GHKASHRKLS GGNDDQTTSA  120
TGTAGGVVTS SGGKSHECSI CHKSFPTGQA LGGHKRRHYE GGAGNNNAGA TGTASSVTES  180
EGVGSTNTNT NTHISNRDFD LNMPALLEFS PANFFVSATG DDEVQSPHPA KKPCLSIPPK  240
IEVNLTI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452438.10.0PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-64ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A0D2R0S40.0A0A0D2R0S4_G
STRINGPOPTR_0002s12010.14e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-56salt tolerance zinc finger
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]